All -> Scientific & Engineering -> Biology/Chemistry

MOLPHY

Not Rated
Description
ProtML is a main program in MOLPHY for inferring evolutionary trees from PROTein (amino acid) sequences by using the Maximum Likelihood method. Other programs (C language)
NucML: Maximum Likelihood Inference of Nucleic Acid Phylogeny
ProtST: Basic Statistics of Protein Sequences
NucST: Basic Statistics of Nucleic Acid Sequences
NJdist: Neighbor Joining Phylogeny from Distance Matrix Utilities (Perl)
mollist: get identifiers list molrev: reverse DNA sequences
molcat: concatenate sequences molcut: get partial sequences
molmerge: merge sequences nuc2ptn: DNA -> Amino acid
rminsdel: remove INS/DEL sites molcodon: get specified codon sites
molinfo: get varied sites mol2mol: MOLPHY format beautifer
inl2mol: Interleaved -> MOLPHY mol2inl: MOLPHY -> Interleaved
mol2phy: MOLPHY -> Sequential phy2mol: Sequential -> MOLPHY
must2mol: MUST -> MOLPHY etc.
Home Page: http://www.ism.ac.jp/ismlib/softother.e.html
Interface: Command Line
Associated Programs
Perl Larry Wall's Practical Extraction and Report Language
phylip [Biology] A package of programs for inferring phylogenies
Available deb Repositories (how-to add a respository)
Debian 32-bit 64-bit
sarge 2.3b3-1 2.3b3-1
etch 2.3b3-2
lenny 2.3b3-5 2.3b3-5
sid 2.3b3-5 2.3b3-5

Ubuntu 32-bit 64-bit
dapper 2.3b3-2 2.3b3-2
feisty 2.3b3-3 2.3b3-3
gutsy 2.3b3-3 2.3b3-3
hardy 2.3b3-3 2.3b3-3
intrepid 2.3b3-5 2.3b3-5

InstallInstall Now (what is this?)
Rating: Not Rated (0 votes)


Login or Register to rate MOLPHY, add a Tag, or designate as an alternative to a Windows app

Upload Screenshots
Images must be in GIF, JPG, or PNG formats and can be no larger than 2 MB. Only one file can be uploaded at a time. A description can be included, but it is optional.
Desc:
File:
You must login or register to upload a screenshot.
Submit Web Links
Submit the title and link (including http://) to an article pertaining to MOLPHY and it will appear in the Web Links section of the right banner. Contact us here if an entry needs to be removed.
Title:
Link:
You must login or register to post links.

Write a Review

  • Allowed HTML tags: <a> <em> <strong> <cite> <code> <ul> <ol> <li> <dl> <dt> <dd>
  • Lines and paragraphs break automatically.
More information about formatting options