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seaview

SeaView

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Description
SeaView is a graphical multiple sequence alignment editor developed by Manolo Gouy. Multiple alignment formats (NEXUS, MSF, CLUSTAL, FASTA, PHYLIP, MASE) are supported for reading and writing. Alignments can be manually edited. The user is further supported by an integration of external programs, i.e., to run DOT-PLOT or MUSCLE, to locally improve the alignment.

When using SeaView for investigations that lead to a publication, please cite the following reference:

Galtier, N., Gouy, M. and Gautier, C. (1996) "SeaView and Phylo_win, two graphic tools for sequence alignment and molecular phylogeny." Comput. Applic. Biosci. 12:543-548.
Home Page: http://pbil.univ-lyon1.fr/software/seaview.html
Interface: Graphical
Associated Programs
clustalw global multiple nucleotide or peptide sequence alignment
muscle Multiple alignment program of protein sequences
xterm X terminal emulator
Available deb Repositories (how-to add a respository)
Debian 32-bit 64-bit
sarge 20021127-4 20021127-4
etch 20060918-1 20060918-1
lenny 1:2.4-1
sid 1:2.4-1 1:2.4-1

Ubuntu 32-bit 64-bit
dapper 20021127-4.1 20021127-4.1
feisty 20060918-1 20060918-1
gutsy 20070417-1 20070417-1
hardy 1:2.2-1 1:2.2-1
intrepid 1:2.4-1 1:2.4-1

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Rating: Not Rated (0 votes)


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